MSIPepPublications › 10.1007/s00216-010-3554-6
Novel molecular tumour classification using MALDI–mass spectrometry imaging of tissue micro-array
- Authors
- Djidja M, Claude E, Snel MF, Francese S, Scriven P, Carolan V, Clench MR
- Journal
- Analytical and Bioanalytical Chemistry (2010)
- Mass tolerance
- 75 ppm – m/z reported to 0.1-0.01 Da; rounding gives errors up to about ±60 ppm.
- DOI
- 10.1007/s00216-010-3554-6
Experiments
- Homo sapiens (human) · Pancreas · Pancreatic tumour
Observations (57)
| Peptide ▲ | Protein | Measured m/z | Calc. m/z | ppm | Species · tissue | Source | Status |
|---|---|---|---|---|---|---|---|
AAAITSDILEALGR |
Periostin Q15063 |
1400.7800 | 1400.7744 | +4.0 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?AGEDGHPGKPGRPGER |
Collagen alpha-2(I) chain P08123 |
1664.7200 | 1664.7735 | -32.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
AGPGGEAGPGGALHR |
Zinc finger protein 219 Q9P2Y4 |
1303.6500 | 1303.6502 | -0.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
AGRAPGPRPAR |
Tumor necrosis factor receptor superfamily member 10A O00220 |
1105.6300 | 1105.6337 | -3.4 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
ALVFVDNHDNQR |
Pancreatic alpha-amylase P04746 |
1427.7000 | 1427.7026 | -1.8 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?AMGIMNSFVNDIFER |
Histone H2B type 1-B P33778 |
1775.8400 | 1775.8091 | +17.4 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
DGEAGAQGPPGPAGPAGER |
Collagen alpha-1(I) chain P02452 |
1690.7800 | 1690.7780 | +1.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?DGEAGAQGPPGPAGPAGER |
Collagen alpha-1(I) chain P02452 |
1706.7500 | 1706.7729 | -13.4 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?DGLNGLPGPIGPPGPR |
Collagen alpha-1(I) chain P02452 |
1561.7800 | 1561.7969 | -10.8 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?DGNPGNDGPPGR |
Collagen alpha-2(I) chain P08123 |
1184.4900 | 1184.4927 | -2.3 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
DLYANTVLSGGTTMYPGIADR |
Actin, cytoplasmic 1 P60709 |
2215.0800 | 2215.0700 | +4.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
DNHLLGTFDLTGIPPAPR |
Endoplasmic reticulum chaperone BiP P11021 |
1934.0000 | 1934.0130 | -6.7 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^4?GAPGDRGEPGPPGPAGFAGPPGADGQPGAK |
Collagen alpha-1(I) chain P02452 |
2703.2300 | 2703.2394 | -3.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^4?GDAGAPGAPGSQGAPGLQGMPGER |
Collagen alpha-1(I) chain P02452 |
2198.9900 | 2198.9731 | +7.7 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GENGVVGPTGPVGAAGPAGPNGPPGPAGSR |
Collagen alpha-2(I) chain P08123 |
2567.2200 | 2567.2597 | -15.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?GEPGPTGLPGPPGER |
Collagen alpha-1(I) chain P02452 |
1465.6900 | 1465.6918 | -1.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GEPGPVGVQGPPGPAGEEGKR |
Collagen alpha-1(I) chain P02452 |
2003.9500 | 2003.9781 | -14.0 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation][Oxidation]^2?GEPGSPGENGAPGQMGPR |
Collagen alpha-1(I) chain P02452 |
1742.7700 | 1742.7399 | +17.3 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?GEQGPAGPPGFQGLPGPSGPAGEVGKPGER |
Collagen alpha-2(I) chain P08123 |
2832.3300 | 2832.3547 | -8.7 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Needs review |
GESGPSGPAGPTGAR |
Collagen alpha-1(I) chain P02452 |
1297.6200 | 1297.6131 | +5.3 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
GETGPAGPAGPVGPVGAR |
Collagen alpha-1(I) chain P02452 |
1546.7800 | 1546.7972 | -11.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
GETGPSGPVGPAGAVGPR |
Collagen alpha-2(I) chain P08123 |
1562.7800 | 1562.7921 | -7.8 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GFPGADGVAGPK |
Collagen alpha-1(I) chain P02452 |
1088.5600 | 1088.5371 | +21.0 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?GFSGLQGPPGPPGSPGEQGPSGASGPAGPR |
Collagen alpha-1(I) chain P02452 |
2705.2900 | 2705.2550 | +12.9 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GIPGPVGAAGATGAR |
Collagen alpha-2(I) chain P08123 |
1267.6700 | 1267.6753 | -4.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GLHGEFGLPGPAGPR |
Collagen alpha-2(I) chain P08123 |
1477.7300 | 1477.7546 | -16.7 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GLTGPIGPPGPAGAPGDKGESGPSGPAGPTGAR |
Collagen alpha-1(I) chain P02452 |
2869.3900 | 2869.4075 | -6.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GLTLPCLPWRR |
Serine/threonine-protein kinase WNK2 Q9Y3S1 |
1327.7200 | 1327.7303 | -7.8 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GPKGENGVVGPTGPVGAAGPAGPNGPPGPAGSR |
Collagen alpha-2(I) chain P08123 |
2865.3600 | 2865.4238 | -22.3 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GPNGDAGRPGEPGLMGPR |
Collagen alpha-2(I) chain P08123 |
1766.7800 | 1766.8239 | -24.8 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GPNGEAGSAGPPGPPGLR |
Collagen alpha-2(I) chain P08123 |
1619.7700 | 1619.7772 | -4.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GPPGPMGPPGLAGPPGESGR |
Collagen alpha-1(I) chain P02452 |
1816.8500 | 1816.8647 | -8.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation][Oxidation]^2?GPPGPMGPPGLAGPPGESGR |
Collagen alpha-1(I) chain P02452 |
1832.8500 | 1832.8596 | -5.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation][Oxidation]^3?GPPGPMGPPGLAGPPGESGR |
Collagen alpha-1(I) chain P02452 |
1848.8500 | 1848.8545 | -2.4 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^4?GPPGSAGAPGKDGLNGLPGPIGPPGPR |
Collagen alpha-1(I) chain P02452 |
2454.2300 | 2454.2372 | -2.9 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GPSGPQGPGGPPGPK |
Collagen alpha-1(I) chain P02452 |
1302.6300 | 1302.6437 | -10.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^2?GSAGPPGATGFPGAAGR |
Collagen alpha-1(I) chain P02452 |
1459.6800 | 1459.6924 | -8.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
GSEGPQGVR |
Collagen alpha-1(I) chain P02452 |
886.4400 | 886.4377 | +2.6 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?GSPGEAGRPGEAGLPGAK |
Collagen alpha-1(I) chain P02452 |
1655.7800 | 1655.7984 | -11.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?GVVGLPGQR |
Collagen alpha-1(I) chain P02452 |
898.5100 | 898.5105 | -0.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
HPDYSVVLLLR |
Albumin P02768 |
1311.7300 | 1311.7419 | -9.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
LLVVYPWTQR |
Hemoglobin subunit beta P68871 |
1274.7300 | 1274.7256 | +3.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
LVNEVTEFAK |
Albumin P02768 |
1149.6300 | 1149.6150 | +13.0 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?MFLSFPTTK |
Hemoglobin subunit alpha P69905 |
1087.5700 | 1087.5492 | +19.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?NHQGPKR |
Breast cancer type 1 susceptibility protein P38398 |
852.4000 | 852.4435 | -51.0 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?NPARTCRDLR |
Collagen alpha-2(I) chain P08123 |
1217.6200 | 1217.6168 | +2.7 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?[Acetyl]-PQLIVMGNLDR |
Protocadherin-1 Q08174 |
– | 1313.6882 | – | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Needs review |
[Oxidation]^2?RGPNGEAGSAGPPGPPGLR |
Collagen alpha-2(I) chain P08123 |
1775.8600 | 1775.8783 | -10.3 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
SYELPDGQVITIGNER |
Actin, aortic smooth muscle P62736 |
1790.9000 | 1790.8919 | +4.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]?TGHPGTVGPAGIR |
Collagen alpha-2(I) chain P08123 |
1235.6300 | 1235.6491 | -15.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?TGPPGPSGISGPPGPPGPAGK |
Collagen alpha-2(I) chain P08123 |
1829.9000 | 1829.9028 | -1.5 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^4?TGPPGPSGISGPPGPPGPAGK |
Collagen alpha-2(I) chain P08123 |
1845.9100 | 1845.8977 | +6.6 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
TVKFKCPSSGTPNPTLR |
Fibroblast growth factor receptor 1 P11362 |
1832.9500 | 1832.9687 | -10.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
VAPEEHPVLLTEAPLNPK |
Actin, cytoplasmic 1 P60709 |
1954.0600 | 1954.0644 | -2.3 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
VGAHAGEYGAEALER |
Hemoglobin subunit alpha P69905 |
1529.7400 | 1529.7343 | +3.7 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
[Oxidation]^3?VGPPGPSGNAGPPGPPGPAGK |
Collagen alpha-1(I) chain P02452 |
1812.8800 | 1812.8875 | -4.1 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |
VTHAVVTVPAYFNDAQR |
Endoplasmic reticulum chaperone BiP P11021 |
1887.9500 | 1887.9712 | -11.2 | Human · Pancreas Pancreatic tumour |
10.1007/s00216-010-3554-6 | Approved |